Serology data

Published Data

Data available from Swedish public agencies and large data produces

SciLifeLab Autoimmunity and Serology profiling facility SARS-CoV-2 antibody test statistics. Hosted by us, updated manually on a weekly basis.

Data available from research groups in Sweden

The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.

The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us

Last updated: 2024-09-04

Data types

All data types (290)

Biochemistry data (34)

Drug discovery data (15)

Genomics & transcriptomics data (84)

Public health data (68)

Serology data (22)

Social science and humanities data (64)

Publication	Available dataset and code
Synthetic coevolution reveals adaptive mutational trajectories of neutralizing antibodies and SARS-CoV-2 Ehling R. A., Minot M., Overath M. D., Sheward D. J., et al (2024) Cold Spring Harbor Laboratory DOI: 10.1101/2024.03.28.587189	A protein language machine learning model that predicts antibody escape to receptor binding domain variants. code GitHub
Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV Ray S., Narayanan A., Vesterbacka J., Blennow O., et al (2023) Springer Science and Business Media LLC DOI: 10.1038/s41522-023-00461-w	Immunological Responses after Vaccination for COVID-19 with the mRNA Vaccine Comirnaty in Immunosuppressed and Immunocompetent Individuals. An open, non-randomized , phase IV multicenter study data EU Clinical Trials Register All codes used for analysis are available in R markdown format. code GitHub
SARS-CoV-2 antibodies from children exhibit broad neutralization and belong to adult public clonotypes Wall S. C., Suryadevara N., Kim C., Shiakolas A. R., et al (2023) Elsevier BV DOI: 10.1016/j.xcrm.2023.101267	Raw sequence reads related to SARS-CoV-2 antibodies from children exhibiting broad neutralisation. data Sequence Read Archive: PRJNA1014462 SARS-CoV-2 spike in complex with Fab 71281-33. data Electron Microscopy Databank: EMD-41075 SARS-CoV-2 spike in complex with Fab 71281-33 (2). data Electron Microscopy Databank: EMD-41076
Systematic review of seroprevalence of SARS-CoV-2 antibodies and appraisal of evidence, prior to the widespread introduction of vaccine programmes in the WHO European Region, January–December 2020 Vaughan A., Duffell E., Freidl G. S., Lemos D. S., et al (2023) BMJ DOI: 10.1136/bmjopen-2022-064240	A collection of serology data created by WHO Unity Studies Global SARS-CoV2 Seroepidemiological Investigations. Includes both data published in studies and other data not used in publications. data Zenodo
Characterising information loss due to aggregating epidemic model outputs Sherratt K., Srivastava A., Ainslie K., Singh D. E., et al (2023) Cold Spring Harbor Laboratory DOI: 10.1101/2023.07.05.23292245	Data used in modelling, including location and population size. data GitHub Data processing code in R is available on Github code GitHub
Vaccine-induced correlate of protection against fatal COVID-19 in older and frail adults during waves of neutralization-resistant variants of concern: an observational study Vikström L., Fjällström P., Gwon Y., Sheward D. J., et al (2023) Elsevier BV DOI: 10.1016/j.lanepe.2023.100646	Data processing code in R is available on Github data GitHub
Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity Brunet-Ratnasingham E., Morin S., Randolph H. E., Labrecque M., et al (2023) Cold Spring Harbor Laboratory DOI: 10.1101/2023.06.14.23290814	Clinical data and biobanks samples from 250 critically ill COVID-19 patients. Appropriate permits are required for access. data Figshare Data from the BQC-19 repository is available after appropriate permissions and data access agreements data BQC-19
Nucleocapsid-specific T cell responses associate with control of SARS-CoV-2 in the upper airways before seroconversion Eser T. M., Baranov O., Huth M., Ahmed M. I. M., et al (2023) Springer Science and Business Media LLC DOI: 10.1038/s41467-023-38020-8	Data cannot be shared publicly, but applications can be made for access. data
Vaccine-induced correlate of protection against fatal COVID-19 in older and frail adults during waves of neutralization-resistant variants of concern: an observational study Vikström L., Fjällström P., Gwon Y., Sheward D. J., et al (2023) Elsevier BV DOI: 10.1016/j.lanepe.2023.100646	Data processing code is available on GitHub code GitHub
SARS-CoV-2 integral membrane proteins shape the serological responses of patients with COVID-19 Martin S., Heslan C., Jégou G., Eriksson L. A., et al (2022) Elsevier BV DOI: 10.1016/j.isci.2021.103185	Clinical and raw data related to serological assay data Mendeley
The Immunology of Multisystem Inflammatory Syndrome in Children with COVID-19 Consiglio C. R., Cotugno N., Sardh F., Pou C., et al (2022) Elsevier BV DOI: 10.1016/j.cell.2020.09.016	Data organised by figures presented in the article. data Mendeley Plasma protein expression (Olink - NPX values), FACS, Autoantibodies. data Figshare Scripts to complete analyses and produce figures. code GitHub
SARS-CoV-2 induces a durable and antigen specific humoral immunity after asymptomatic to mild COVID-19 infection Havervall S., Jernbom Falk A., Klingström J., Ng H., et al (2022) Public Library of Science (PLoS) DOI: 10.1371/journal.pone.0262169	Metadata record for dataset data Figshare
Virological and immunological features of SARS-CoV-2-infected children who develop neutralizing antibodies Cotugno N., Ruggiero A., Bonfante F., Petrara M. R., et al (2021) Elsevier BV DOI: 10.1016/j.celrep.2021.108852	Data required to produce the figures, includes data on proteomics and immunology data Mendeley R code for multi-omics factor analyses, correlations, and plots code GitHub
Multianalyte serology in home-sampled blood enables an unbiased assessment of the immune response against SARS-CoV-2 Roxhed N., Bendes A., Dale M., Mattsson C., et al (2021) Springer Science and Business Media LLC DOI: 10.1038/s41467-021-23893-4	Source Data (data on antibody titer, among other things) data Code for analysis (R) code Github
Time series analysis and mechanistic modelling of heterogeneity and sero-reversion in antibody responses to mild SARS‑CoV-2 infection Manisty C., Treibel T. A., Jensen M., Semper A., et al (2021) Elsevier BV DOI: 10.1016/j.ebiom.2021.103259	Possible to apply for access to deidentified patient data and samples data
Seropositivity in blood donors and pregnant women during the first year of SARS‐CoV‐2 transmission in Stockholm, Sweden Castro Dopico X., Muschiol S., Christian M., Hanke L., et al (2021) Wiley DOI: 10.1111/joim.13304	Data related to discriminative bayesian seroprevalence data GitHub Code related to discriminative bayesian seroprevalence (see notebook). code GitHub Code used in analysis of seroprevalence data (R) code GitHub Seroprevalence data related to R code data GitHub
Single-Dilution COVID-19 Antibody Test with Qualitative and Quantitative Readouts Bortz R. H., Florez C., Laudermilch E., Wirchnianski A. S., et al (2021) American Society for Microbiology DOI: 10.1128/mSphere.00224-21	Input data related to ELISA tests. data GitHub Code related to modelling antibody titer quantification from single dilution points. code GitHub
Antibodies to SARS-CoV-2 and risk of past or future sick leave Dillner J., Elfström K. M., Blomqvist J., Eklund C., et al (2021) Springer Science and Business Media LLC DOI: 10.1038/s41598-021-84356-w	Pseudonymised, individual-level data that allow full replication of the results in this article are freely available from joakim.dillner@sll.se or from the Karolinska University Hospital data analysis department: tableau.karolinska@sll.se. data
Serum-IgG responses to SARS-CoV-2 after mild and severe COVID-19 infection and analysis of IgG non-responders Marklund E., Leach S., Axelsson H., Nyström K., et al (2020) Public Library of Science (PLoS) DOI: 10.1371/journal.pone.0241104	Serum-IgG responses to SARS-CoV-2 after mild and severe COVID-19 infection. data Zenodo
SARS-CoV-2 exposure, symptoms and seroprevalence in healthcare workers in Sweden Rudberg A., Havervall S., Månberg A., Jernbom Falk A., et al (2020) Springer Science and Business Media LLC DOI: 10.1038/s41467-020-18848-0	Source data related to symptoms and some aggregated patient data. data Data cannot be made publicly available, but can be made available upon request. data
Probabilistic approaches for classifying highly variable anti-SARS-CoV-2 antibody responses Dopico X. C., Hanke L., Sheward D. J., Muschiol S., et al (2020) Cold Spring Harbor Laboratory DOI: 10.1101/2020.07.17.20155937	Code for discriminative bayesian seroprevalence. code GitHub Data for discriminative bayesian seroprevalence. data GitHub Code used in analysis of seroprevalence data. code GitHub Seroprevalence data. data GitHub
High seroprevalence of SARS-CoV-2 in elderly care employees in Sweden Lindahl J. F., Hoffman T., Esmaeilzadeh M., Olsen B., et al (2020) Informa UK Limited DOI: 10.1080/20008686.2020.1789036	Serological responses of 1,005 employees to SARS-CoV-2 at 22 different elderly care homes in Stockholm, Sweden, and the number of employees that reported known contacts with COVID-19. data Prevalence of IgM (either only IgM or combined with IgG) or only IgG among elderly care home employees with or without reported symptoms. data Predictors for seropositivity in both univariable and multivariable analyses. data